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BioSimGrid

BioSimGrid was a project to make data sets from computer simulations in the field of modelling biological systems , particularly biomolecular structures , more accessible to res...

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BioSimGrid was a project to make data sets from computer simulations in the field of modelling biological systems, particularly biomolecular structures, more accessible to researchers. The project began in 2004 and halted by 2009.

In 2004 designers presented the concept of the project as a "protein data bank extended in time".[1] Other developers presented a web portal for accessing data in the project.[2] Other designers described the project as efficient.[3]

A review in 2006 described how BioSimGrid was a model project for making data from research more open.[4]

BioSimGrid contributors accepted a grant from the National Institutes of Health in 2007.[5]

References

  1. ↑Tai, Kaihsu; Murdock, Stuart; Wu, Bing; Ng, Muan Hong; Johnston, Steven; Fangohr, Hans; Cox, Simon J.; Jeffreys, Paul; Essex, Jonathan W.; P. Sansom, Mark S. (2004). "BioSimGrid: towards a worldwide repository for biomolecular simulations". Organic & Biomolecular Chemistry. 2 (22): 3219–21. CiteSeerX 10.1.1.58.9886. doi:10.1039/b411352g. PMID 15534698.
  2. ↑Wu, B.; Dovey, M.; Ng, M.H.; Tai, K.; Murdock, S.; Jeffreys, P.; Cox, S.; Essex, J.; Sansom, M.S.P. (2004). "A Web/Grid portal implementation of BioSimGrid: A biomolecular simulation database". International Conference on Information Technology: Coding and Computing, 2004. Proceedings. ITCC 2004. Vol. 2. pp. 50–54. CiteSeerX 10.1.1.108.6976. doi:10.1109/ITCC.2004.1286589. ISBN 978-0-7695-2108-4. S2CID 5729099.
  3. ↑Ng, Muan Hong; Johnston, Steven; Murdock, Stuart; Wu, Bing; Tai, Kaihsu; Fangohr, Hans; Cox, Simon; Essex, Jonathan W.; Sansom, Mark; Jeffreys, Paul (2004). "Efficient data storage and analysis for generic biomolecular simulation data". pp. 443–450.
  4. ↑ Ng, Muan Hong; Johnston, Steven; Wu, Bing; Murdock, Stuart E.; Tai, Kaihsu; Fangohr, Hans; Cox, Simon J.; Essex, Jonathan W.; Sansom, Mark SP; Jeffreys, Paul (mayo de 2006). "BioSimGrid: almacenamiento y análisis de datos de simulación biomolecular habilitados para la computación en malla" (PDF) . Future Generation Computer Systems . 22 (6): 657– 664. doi : 10.1016/j.future.2005.10.005 .
  5. ↑ Murdock, Stuart (2007). "Extending Biosimgrid for Biomol Simulation" . Grantome .
  • Sitio web oficial
  • biosimgrid.org ya no está en funcionamiento y fue archivado el 17 de julio de 2009 en la Wayback Machine.
  • Archivo de archivos en SourceForge